Journal Club

Sangho Yoon

Andrew L. Ji et al.

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Jihoon Kim

Linbin Yang et al.

DNA of neutrophil extracellular traps promotes cancer metastatis via CCDC25

Hanji Kim

Liu, R., Gao, Q., Foltz, S.M. et al.

Co-evolution of tumor and immune cells during progression of multiple myeloma

Sangjin Lee

Roser Vilarrasa-Blasi et al.

Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation

Seowon Choi

Ghofran Othorm et al.

Pan-cancer proteomgenomic analysis reveals long and circular noncoding RNAs encoding peptides

Minhak Choi

Jonathan R. Belyeu et al.

De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families

Seokju Park

Robert Buschauer et al.

The Ccr4-Not complex monitors the translating ribosome for codon optimality

Kyungtae Lee

Jinyang Zhang et al.

Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long

Dohun Yi

E. Agirre et al.

Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition

Vipin Menon

Kim Hui Kwon et al.

Predicting the efficiency of prime editing guide RNAs in human cells

Sangho Yoon

Yuan Zhou

Single-Cell Multiomics Sequencing Reveals Prevalent Genomic Alterations in Tumor Stromal Cells of Human Colorectal Cancer

Hanji Kim

Nan Miles Xi

Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data,

Youxi Cui

Hudson WH

Expression of novel long noncoding RNAs defines virus-specific effector and memory CD8+ T cells

Eungyeong Park

Chen S

Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression

Sungjin Pyo

Viorel simion

A macrophage-specific lncRNA regulates apoptosis and atherosclerosis by tethering HuR in the nucleus

Minhak Choi

Kiran V. Garimella

Detection of simple and complex de novo mutations with multiple reference sequences

Seowon Choi

Liang W.C.

Translation of the circular RNA circb-catenin promotes liver cancer cell growth through activation of the Wnt pathway

Seokju Park

Charlie et al

The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation

Dohun Yi

Isac Lee

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

Kyungtae Lee

Kevin Lehrigrand et al

High throughput error corrected Nanopore single cell transcriptome sequencing

Vipin Menon

Andrew V Anzalone et al

Search and replace genome editing without double strand breaks or donor DNA

Youxi Cui

Per Johnsson

Transcriptional kinetics and molecular functions of long non-coding RNAs

Hanji Kim

Abha S Bais et al

scds : computational annotation of doublets in single-cell RNA sequencing data

Eungyeong Park

Junbin Qian et al

A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling

Sungjin Pyo

Thomas Krausgruber et al

Structural cells are key regulators of organ-specific immune responses

Minhak Choi

Justin M Zook et al

A robust benchmark for dectection of germline large deletions and insertions

Seowon Choi

Timoteo GD

Modulation of circRNA Metabolism by m 6 A Modification

Seokju Park

Wang, Jingjing, et al

XPO5 promotes primary miRNA processing independently of RanGTP

Dohun Yi

Zaccara S

A Unified Model for the Function of YTHDF Proteins in Regulating m6A-Modified mRNA

Kyungtae Lee

Chun-Jie Guo et al

Distinct Processing of lncRNAs Contributes to Nonconserved Functions in Stem Cells

Vipin Menon

Nahye kim et al

Prediction of the sequence-specific cleavage activity of Cas9 variants

Sangho Yoon

Lei Zhang et al.

Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer

Hanji Kim

Jean-Charles Boisset et al

Mapping the physical network of cellular interactions

Youxi Cui

Haitao Luo et al

Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity

Sungjin Pyo

Yongsheng Li et al.

Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers

Eungyeong Park

Benjamin Izar et al

A single-cell landscape of high-grade serous ovarian cancer

Seowon Choi

Marina Reixachs-Solé et al

Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome

Minhak Choi

Shan Jiang et al

Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts

Kyungtae Lee

Yan Song et al

Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation

Seokju Park

Johannes Linder et al

Deep exploration networks for rapid engineering of functional DNA sequences

Dohun Yi

William Stephenson et al

Direct detection of RNA modifications and structure using single molecule nanopore sequencing

Vipin Menon

Hui Kwon Kim et al

High-throughput analysis of the activities of xCas9, SpCas9-NG and SpCas9 at matched and mismatched target sequences in human cells

Sangho Yoon

Hae-Ock Lee et al

Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer

Hanji Kim

Daniel A Skelly et al

Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart

Youxi Cui

Kevin C H et al

QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data

Seokju Park

Asako McCloskey et al

hnRNP C Tetramer Measures RNA Length to Classify RNA Polymerase II Transcripts for Export

Dohun Yi

Yi Tay

SYNTHESIZER: Rethinking Self-Attention in Transformer Models

Sungjin Pyo

Zhilei Bian et al

Deciphering human macrophage development at single-cell resolution

Eungyeong Park

Nayoung Kim etl al

Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma

Hyunwoo Kim

Bjorem Gaertner

A functional screen of translated pancreatic lncRNAs identifies a microprotein-independent role for LINC00261 in endocrine cell differentiation

Seowon Choi

Peng Zhang

Comprehensive identification of alternative back-splicing in human tissue transcriptomes

Minhak Choi

Yu Liang et al

Comparative Analysis for the Performance of Variant Calling Pipelines on Detecting the de novo Mutations in Humans

Kyungtae Lee

Tetsurato Hayashi

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs

Vipin Menon

Russel T Walton et al

Unconstrained genome targeting with near-PAMless engineered CRISPR-Cas9 variants

Hanji Kim

Christopher S McGinnis et al

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

Sangho Yoon

Elisabeta Mereu et al

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Youxi Cui

Runsheng Li et al

Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans developmen

Eungyeong Park

Tabula Consortium

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

Hyunwoo Kim

Jin Chen et al

Pervasive functional translation of non canonical human open reading frames

Sungjin Pyo

Yongsheng Li et al.

Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers

Minhak Choi


Pan-cancer analysis of whole genomes The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium

Seowon Choi

Jinyang Zhang et al

Accurate quantification of circular RNAs identifies extensive circular isoform switching events

Seokju Park

Brian Reichholf et al

Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis

Jang-il sohn

Yilong Li et al

Patterns of somatic structural variation in human cancer genomes

Dohun Yi

Alexa BR Mcintyre et al

Limits in the detection of m6A changes using MeRIP/m6A-seq

Sangho Yoon

LichunMa, et al.,

Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer

Vipin Menon

Hui Kwon Kim et al

High-throughput analysis of the activities of xCas9, SpCas9-NG and SpCas9 at matched and mismatched target sequences in human cells

Youxi Cui

Leiming You, et al

APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals

Eungyeong Park

Diether Lambrechts et al

Phenotype molding of stromal cells in the lung tumor microenvironment

Hyunwoo Kim

Thomas F. Martinez et al

Accurate annotation of human protein-coding small open reading frames

Seowon Choi

Joana Carlevaro et al

Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization

Sungjin Pyo

Barbara Maria eta la

Neutrophils escort circulating tumour cells to enable cell cycle progression

Minhak Choi

Kijong Yi et al

Patterns and mechanisms of structural variations in human cancer


[Seminar] June/9/2021

장소: 온라인

강사: 하정우 박사

주제: HyperCLOVA: 새로운 네이버 AI의 시작과 미래

[Seminar] May/26/2021

장소: 온라인

강사: 김대겸 박사

주제: Environment-dependent binary protein interactome of a cell

[Seminar] Mar/11/2021

장소: 온라인

강사: 허준호 박사

주제: Application of CRISPR for epigenetic cell engineering and genomics characterization

[Seminar] Feb/02/2021

장소: 온라인

강사: 박지환 박사

주제: Integrative single cell analysis identifies key genes resposible for disease development. 

[Seminar] Nov/04/2020

장소: FTC 402호

강사: 임재철 박사

주제: mRNA metabolism in quiescence and dormancy

[Seminar] Sep/15/2020

장소: FTC 1114호

강사: 안준용 박사

주제: Simons Simplex Collection is a perfect genomic dataset to study genetics

[Seminar] July/28/2020

강사: 윤재원 박사

주제: 차세대 염기서열분석을 통한 바이오마커 발굴 연구

[Seminar] MAY/06/2020

강사: 김태경 박사

주제: Epigenetic Regulation of Enhancer Activity Underlying Brain Plasticity

[Seminar] OCT/24/2019

장소: FTC 1123호

강사: 장혜식 박사

주제: Single-molecule RNA analysis by nanopore sequencing

[Seminar] SEP/04/2019

​장소: 자연과학대학 B117호

강사: Jay W. Shin 박사

주제: Harnessing the Power of Single Cell Genomics

[Seminar] SEP/02/2019

​장소: FTC 402호

강사: 김병희 박사

주제: 바이오데이터 분석을 위한 딥러닝 교육

[Seminar] DEC/03/2018

​장소: FTC 402호

강사: 류기정 박사

주제: 뉴로사이언스의 산업적 응용

[Seminar] NOV/01/2018

장소: FTC 402호

강사: Hanlee p.JI 박사

주제: Elucidating the cellular and genomic features of cancer with integrative single cell DNA and RNA genomics

[Seminar] OCT/30/2018

장소: FTC 402호

강사: 이호준 박사

주제: Analysis of cancer genomes for personalized immuno-therapy in clinical phase 1 trial

[Seminar] SEP/19/2018

장소: 자연대 B117호

강사: Alexei A. Aravin 박사

주제: Molecular mechanism of piRNA-guided transcriptional repression

[Seminar] June/12/2018

일시: 2018. 06.12. 화요일 9:30 ~ 10:30
장소: FTC 1114호

강사: 김병희 박사

주제: Recurrent Neural Networks을 이용한 Sequence Modeling

[Seminar] May/30/2018

일시: 2018. 05.30. 수요일 11:00 ~ 13:00

장소: 자연대 B117호

강사: 김윤기 박사

주제: mRNA surveillance pathways

[Seminar] May/28/2018

일시: 2018. 05.28. 월요일 10:00 ~ 12:00
장소: FTC 1114호

강사: 한남식 박사

주제: Long noncoding RNAs: regulation and functions

[Seminar] May/24/2018

일시: 2018. 05.24. 목요일 17:00 ~ 18:00

장소: 자연대 749호

강사: 김영은 박사

주제: Variant Interpretation

[Seminar] May/23/2018

일시: 2018. 05.23. 수요일 17:30 ~ 18:30

장소: 자연대 749호

강사: 허훈 박사

주제: Function of tumor-stroma in gastric cancer progression

[Seminar] May/18/2018

일시: 2018. 05.18. 금요일 16:00 ~ 18:00
장소: FTC 402호

강사: 권영 박사

주제: Tumor, Metastasis and Cachexia in Fruit Flies

[Seminar] April/11/2018

일시: 2018. 04.11. 수요일 11:00 ~ 13:00

장소: 자연대 B117호

강사: 김상우 박사

주제: Computational analysis of somatic mutations and their clinical implications

[Seminar] April/04/2018

일시: 2018. 04.04. 수요일 16:00 ~ 18:00

장소: FTC 402호

강사: 김현기 박사

주제: Stem cell, organoid and cancer

[Seminar] March/30/2018

일시: 2018. 03.30. 금요일 16:00 ~ 18:00

장소: 자연대 749호

강사: 오요한 박사

주제: Human pluripotent stem cell-derived neurons for the developmental study and the disease modeling

[Seminar] March/13/2018

일시: 2018. 03.13. 화요일 09:30 ~ 11:30

장소: FTC 402호

강사: 김진중 연구원

주제: 딥런닝 텐서플로우 맛

[Seminar] December/05/2017

일시: 2017. 12.05. 화요일 17:00 ~ 19:00

장소: 자연대 749호

강사: 김태경 박사

주제: An unexpected role of the checkpoint protein Bub1 in promoting anaphase onset.

[Seminar] November/01/2017

일시: 2017. 11. 01. 수요일 11:00 ~ 13:00

장소: 자연대 B117호

강사: 최무림 박사

주제: Application of precision medicine to rare neurologic disease.

[Seminar] October/25/2017

일시: 2017. 10. 25. 수요일 11:00 ~ 13:00

장소: 자연대 B117호

강사: 한진주 박사

주제: Non-Coding RNAs in the brain: Functional implications of miR-19 in the migration of newborn neurons in the adult brain.

[Seminar] September/13/2017

일시: 2017. 09. 13. 수요일 11:00 ~ 13:00

장소: 자연대 B117호

강사: Huili Guo 박사

주제: Ribosome heterogeneity and translational control

[Seminar] August/10/2017

일시: 2017. 08. 10. 목요일 16:30-18:30

장소: FTC 1115호

강사: 한미령 박사

주제: Genetic factors associated with breast cancer in Asian women.

[Seminar] July/20/2017

일시: 2017. 07. 20. 목요일 14:00-17:10
장소: 숭실대학교 진리관 410호
강사: 이혜옥 수석연구원
주제: Single-cell transcriptome analysis/Single-cell analysis for cancer studies

[Seminar] May/24/2017

일시: 2017. 05. 24. 수요일 9:30 ~ 11:30
장소: 자연대 205호
강사: 설우준 박사
주제: 기후변화와 미생물

[Seminar] May/15/2017

일시: 2017. 05. 15. 월요일 16:00 ~ 18:00
장소: FTC 1114호
강사: 윤제현 박사
주제: Biophysical analysis of microRNA-binding proteins

[Seminar] April/28/2017

일시: 2017.04.28 16:00 ~ 18:00

장소: 한양대학교 FTC 402호

강사:  이상근 박사

주제: Learning Graph Structure using Sorted L1 Regularization

강사 : 임희웅 박사

주제 : Critical Role of Histone Deacetylase 3 for Acute Adaptive Thermogenesis in Brown Adipose Tissue

[Seminar] March/29/2017

일시: 2017.01.11 11:00 ~ 13:00

강사: 김종경 박사

장소: 한양대학교 자연과학관 B117호

주제: Revealing cellular heterogeneity with single-cell RNA-seq

[Seminar] Jan/11/2017

일시: 2017.01.11 16:00 ~ 19:00

강사: 김동혁 박사

장소: 한양대학교 FTC 1114호

주제: Systems biology: biology as a whole-systems approach to study bacterial metabolism

[Seminar] Jan/05/2017

일시: 2017.01.05 16:00 ~ 19:00

강사: 원홍희 박사

장소: 한양대학교 FTC 402호

주제: From common to rare genetic variation in cardiovasular disease

[Seminar] Nov/18/2016

일시: 2016.11.18 16:00 ~ 19:00

강사: 장인익 박사

장소: 한양대학교 FTC 402호

주제: Critical Role of Endothelin in Bone Remodeling

강사: 강승구 박사

장소: 한양대학교 FTC 402호

주제: MicroRNA mediated Regulation of Germinal Center Reaction

[Seminar]  Sep/21/2016

일시: 2016. 09. 21.  11:00 ~ 12:00

강사: 한범 박사

장소:자연대 B117호

주제: Statistical methods for ananlyzing large-scale genomic data: subgroup heterogeneity and HLA imputation

[seminar] July/15/2016

일시 : 2016.07.15   11:00

강사 : 김진환 박사
장소 : 한양대학교 FTC 402호

주제 : Solving tricky problems in biology using artificial intelligence who learns and develops for itself.

[Seminar]  Apr/27/2016

일시: 2016. 04. 26.  11:00 ~ 13:00

강사: 정성원 박사

장소: 자연과학대학 B117호 

주제: Evaluating personalized pathway activities from high-throughput genomic profiles

[seminar] March/24/2016

일시 : 2016.03.24   13:00

강사 : 주철민 박사
장소 : 한양대학교 FTC 402호

주제 : TRBP ensures efficient Dicer processing of precursor microRNA in crowded cellular environments 

[Seminar] Dec/23/2015

일시: 2015. 12. 23. Wednesday 13:30 ~ 14:30

강사: 김영국 박사

장소: FTC 402호 

주제: Application of Knockout into the Study of MicroRNAs

[Seminar] Sep/11/2015

일시: 2015. 09. 11. Friday 10:00 ~ 11:00

강사: 정영태 박사

주제: KEAP1/NRF2 and TP53 mutations in squamous cell lung cancer formation and radioresistance

[Seminar] Aug/24/2015

일시 : 2015년 08월 24일 (월)  11:00~13:00

장소 :  자연과학대학 B116호

강사: 이호준 박사

주제 : An Integrative Pan-TCGA Analysis for Clinically Relevant Genomic/proteomic Alterations and Targeted Therapeutic Prediction